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	<title>bioformats &#8211; notizBlog</title>
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		<title>bioformats: microformats for biology</title>
		<link>https://notiz.blog/2007/09/06/bioformats-microformats-for-biology/</link>
					<comments>https://notiz.blog/2007/09/06/bioformats-microformats-for-biology/#respond</comments>
		
		<dc:creator><![CDATA[Matthias Pfefferle]]></dc:creator>
		<pubDate>Thu, 06 Sep 2007 12:49:56 +0000</pubDate>
				<category><![CDATA[Open Web]]></category>
		<category><![CDATA[bioformats]]></category>
		<category><![CDATA[FediBlog]]></category>
		<category><![CDATA[Microformats]]></category>
		<category><![CDATA[Mikroformate]]></category>
		<guid isPermaLink="false">http://notizblog.org/2007/09/06/bioformats-microformats-for-biology/</guid>

					<description><![CDATA[Modern biological research is reliant on the data and tools made available on the web. However, even as the volume of biological data grows, and as new tools arrive to accommodate this growth, putting them to work is not straightforward. Cut and paste, screen scrapers and custom parsers are all common place. Microformats offer an [&#8230;]]]></description>
										<content:encoded><![CDATA[
<div class="wp-block-image"><figure class="aligncenter"><img decoding="async" src="https://notiz.blog/wp-content/uploads/2007/09/bioformats.png" alt="bioformats"/></figure></div>



<blockquote class="wp-block-quote is-layout-flow wp-block-quote-is-layout-flow"><p>Modern biological research is reliant on the data and tools made available on the web. However, even as the volume of biological data grows, and as new tools arrive to accommodate this growth, putting them to work is not straightforward. Cut and paste, screen scrapers and custom parsers are all common place. Microformats offer an alternative. <a href="https://web.archive.org/web/20080607054520/http://bioformats.org/">﻿</a></p><cite><a href="https://web.archive.org/web/20080607054520/http://bioformats.org/">#</a></cite></blockquote>



<p>Bioformats sind Mikroformate um biologische Daten abzubilden. Es gibt schon ein paar <em>Working Drafts</em> für <a href="https://web.archive.org/web/20071012151734/http://bioformats.org:80/hProtein/">Proteine</a>, <a href="https://web.archive.org/web/20090331074744/http://bioformats.org:80/hGene/">Gene</a> und <a href="https://web.archive.org/web/20071012151758/http://bioformats.org:80/hSequence/">Abläufe</a>, wobei bisher nur die <a href="https://web.archive.org/web/20090331074744/http://bioformats.org:80/hGene/">hGenes</a> ausformuliert wurden.</p>



<p>Ein hGene könnte wie folgt aussehen:
</p>


<pre class="wp-block-code"><span><code class="hljs language-xml"><span class="hljs-tag">&lt;<span class="hljs-name">div</span> <span class="hljs-attr">class</span>=<span class="hljs-string">'hgene'</span>&gt;</span>
  <span class="hljs-tag">&lt;<span class="hljs-name">span</span> <span class="hljs-attr">class</span>=<span class="hljs-string">'name'</span>&gt;</span>BRCA2<span class="hljs-tag">&lt;/<span class="hljs-name">span</span>&gt;</span>
  <span class="hljs-tag">&lt;<span class="hljs-name">p</span> <span class="hljs-attr">class</span>=<span class="hljs-string">'description'</span>&gt;</span>
    Breast cancer type 2 susceptibility protein 
    (Fanconi anemia group D1 protein)	
  <span class="hljs-tag">&lt;/<span class="hljs-name">p</span>&gt;</span>
  <span class="hljs-tag">&lt;<span class="hljs-name">ul</span>&gt;</span>
    <span class="hljs-tag">&lt;<span class="hljs-name">li</span>&gt;</span>Genbank: <span class="hljs-tag">&lt;<span class="hljs-name">a</span> <span class="hljs-attr">href</span>=<span class="hljs-string">'genbank.pl?U43746'</span> <span class="hljs-attr">class</span>=<span class="hljs-string">'ident'</span> <span class="hljs-attr">rel</span>=<span class="hljs-string">'genbank'</span>&gt;</span>U43746<span class="hljs-tag">&lt;/<span class="hljs-name">a</span>&gt;</span><span class="hljs-tag">&lt;/<span class="hljs-name">li</span>&gt;</span>
    <span class="hljs-tag">&lt;<span class="hljs-name">li</span>&gt;</span>Entrez: <span class="hljs-tag">&lt;<span class="hljs-name">a</span> <span class="hljs-attr">href</span>=<span class="hljs-string">'entrez.pl?675'</span> <span class="hljs-attr">class</span>=<span class="hljs-string">'ident'</span> <span class="hljs-attr">rel</span>=<span class="hljs-string">'entrez'</span>&gt;</span>675<span class="hljs-tag">&lt;/<span class="hljs-name">a</span>&gt;</span><span class="hljs-tag">&lt;/<span class="hljs-name">li</span>&gt;</span>
    <span class="hljs-tag">&lt;<span class="hljs-name">li</span>&gt;</span>Location: <span class="hljs-tag">&lt;<span class="hljs-name">a</span> <span class="hljs-attr">href</span>=<span class="hljs-string">'lookup.pl?675'</span> <span class="hljs-attr">class</span>=<span class="hljs-string">'location'</span> <span class="hljs-attr">rel</span>=<span class="hljs-string">'homo_sapiens'</span>&gt;</span>13:31787611-31871347<span class="hljs-tag">&lt;/<span class="hljs-name">a</span>&gt;</span><span class="hljs-tag">&lt;/<span class="hljs-name">li</span>&gt;</span>	  
  <span class="hljs-tag">&lt;/<span class="hljs-name">ul</span>&gt;</span>
<span class="hljs-tag">&lt;/<span class="hljs-name">div</span>&gt;</span></code></span></pre>


<p>Witzige Idee&#8230; vor allem das Logo!</p>



<p>Mal schauen was neben <a href="http://microformats.org">Microformats</a>, <a href="https://web.archive.org/web/20081001174233/http://twitternanoformats.wikispaces.com/">Nanoformats</a>, <a href="http://microformats.org/wiki/picoformats">Picoformats</a> und jetzt auch <a href="https://web.archive.org/web/20080607054520/http://bioformats.org/">Bioformats</a> noch so alles entsteht.</p>
<p>RSS readers like you are the unsung heroes of the internet. Keep up the good work!</p>]]></content:encoded>
					
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