{"id":562,"date":"2007-09-06T14:49:56","date_gmt":"2007-09-06T12:49:56","guid":{"rendered":"http:\/\/notizblog.org\/2007\/09\/06\/bioformats-microformats-for-biology\/"},"modified":"2020-11-19T10:59:16","modified_gmt":"2020-11-19T09:59:16","slug":"bioformats-microformats-for-biology","status":"publish","type":"post","link":"https:\/\/notiz.blog\/2007\/09\/06\/bioformats-microformats-for-biology\/","title":{"rendered":"bioformats: microformats for biology"},"content":{"rendered":"\n
\"bioformats\"\/<\/figure><\/div>\n\n\n\n

Modern biological research is reliant on the data and tools made available on the web. However, even as the volume of biological data grows, and as new tools arrive to accommodate this growth, putting them to work is not straightforward. Cut and paste, screen scrapers and custom parsers are all common place. Microformats offer an alternative. \ufeff<\/a><\/p>#<\/a><\/cite><\/blockquote>\n\n\n\n

Bioformats sind Mikroformate um biologische Daten abzubilden. Es gibt schon ein paar Working Drafts<\/em> f\u00fcr Proteine<\/a>, Gene<\/a> und Abl\u00e4ufe<\/a>, wobei bisher nur die hGenes<\/a> ausformuliert wurden.<\/p>\n\n\n\n

Ein hGene k\u00f6nnte wie folgt aussehen:\n<\/p>\n\n\n

<div<\/span> class<\/span>='hgene'<\/span>><\/span>\n  <span<\/span> class<\/span>='name'<\/span>><\/span>BRCA2<\/span<\/span>><\/span>\n  <p<\/span> class<\/span>='description'<\/span>><\/span>\n    Breast cancer type 2 susceptibility protein \n    (Fanconi anemia group D1 protein)\t\n  <\/p<\/span>><\/span>\n  <ul<\/span>><\/span>\n    <li<\/span>><\/span>Genbank: <a<\/span> href<\/span>='genbank.pl?U43746'<\/span> class<\/span>='ident'<\/span> rel<\/span>='genbank'<\/span>><\/span>U43746<\/a<\/span>><\/span><\/li<\/span>><\/span>\n    <li<\/span>><\/span>Entrez: <a<\/span> href<\/span>='entrez.pl?675'<\/span> class<\/span>='ident'<\/span> rel<\/span>='entrez'<\/span>><\/span>675<\/a<\/span>><\/span><\/li<\/span>><\/span>\n    <li<\/span>><\/span>Location: <a<\/span> href<\/span>='lookup.pl?675'<\/span> class<\/span>='location'<\/span> rel<\/span>='homo_sapiens'<\/span>><\/span>13:31787611-31871347<\/a<\/span>><\/span><\/li<\/span>><\/span>\t  \n  <\/ul<\/span>><\/span>\n<\/div<\/span>><\/span><\/code><\/span>Code-Sprache:<\/span> HTML, XML<\/span> (<\/span>xml<\/span>)<\/span><\/small><\/pre>\n\n\n
Witzige Idee… vor allem das Logo!<\/p>\n\n\n\n
Modern biological research is reliant on the data and tools made available on the web. However, even as the volume of biological data grows, and as new tools arrive to accommodate this growth, putting them to work is not straightforward. Cut and paste, screen scrapers and custom parsers are all common place. Microformats offer an […]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"webmentions_disabled_pings":false,"webmentions_disabled":false,"activitypub_content_warning":"","activitypub_content_visibility":"","activitypub_max_image_attachments":4,"activitypub_interaction_policy_quote":"anyone","activitypub_status":"","footnotes":""},"categories":[2],"tags":[396,5171,164,183],"class_list":{"0":"post-562","1":"post","2":"type-post","3":"status-publish","4":"format-standard","6":"category-web","7":"tag-bioformats","8":"tag-fediblog","9":"tag-microformats","10":"tag-mikroformate","11":"h-entry","12":"hentry"},"_links":{"self":[{"href":"https:\/\/notiz.blog\/wp-api\/wp\/v2\/posts\/562","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/notiz.blog\/wp-api\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/notiz.blog\/wp-api\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/notiz.blog\/wp-api\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/notiz.blog\/wp-api\/wp\/v2\/comments?post=562"}],"version-history":[{"count":1,"href":"https:\/\/notiz.blog\/wp-api\/wp\/v2\/posts\/562\/revisions"}],"predecessor-version":[{"id":20869,"href":"https:\/\/notiz.blog\/wp-api\/wp\/v2\/posts\/562\/revisions\/20869"}],"wp:attachment":[{"href":"https:\/\/notiz.blog\/wp-api\/wp\/v2\/media?parent=562"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/notiz.blog\/wp-api\/wp\/v2\/categories?post=562"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/notiz.blog\/wp-api\/wp\/v2\/tags?post=562"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}
Mal schauen was neben Microformats<\/a>, Nanoformats<\/a>, Picoformats<\/a> und jetzt auch Bioformats<\/a> noch so alles entsteht.<\/p>\n","protected":false},"excerpt":{"rendered":"